rs47042873 SNP Detail

Summary

• ID
  rs47042873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:34078536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCC AGAAGGTCAT CCAATGTCCC
  Y
  ATTTACATAA TCTAGACTAT GGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139269626	ENSMUSSNP4753830	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47042873					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:34078536 () rs orientation: forward

Symbol	Name	Function Class
D14Mit45	DNA segment, Chr 14, Massachusetts Institute of Technology 45	667 bp proximal
Fam25a	family with sequence similarity 25, member A	1146 bp upstream
Tssr128061	transcription start site region 128061	1178 bp upstream
Tssr128062	transcription start site region 128062	1676 bp downstream