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rs47044605 SNP Detail
Summary
  • ID
    rs47044605
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr5:101009791 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TAGGA TACGAGAATG GTTACCAGCC
    C
    GGACTCAGCT GGGATGAGGG CAGGG                                      
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss148929907 ENSMUSSNP50476 ENSEMBL ENSEMBL_Sanger f SNP C C
ss321627756 CHEV_5_101290944 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs47044605 SNP C C C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:101009791 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm73351 predicted gene, 73351 91 bp upstream
Gpat3 glycerol-3-phosphate acyltransferase 3 within coordinates
Rr378349 regulatory region 378349 507 bp upstream
Rr615578 regulatory region 615578 388 bp distal
Rr615579 regulatory region 615579 within coordinates
Rr615580 regulatory region 615580 102 bp proximal
Tssr47495 transcription start site region 47495 92 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory