rs47044622 SNP Detail

Summary

• ID
  rs47044622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79887484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCGATAA ACAAACAAAC
  TTGTCATCCC GGCAGGCACT CAGGAGGGTG AAGTAGGGGG ATCAGGAGTT CAAGGTCATC
  CTTGGCTACA AAGTGAGTTT CAGGCCAGCC TGGGCTACGT GAGACCCTGT CTCCAAAATA
  ACAATGAGGT AAAAGTCAGG CTCTGTCCAG AAGCTGGTAG CTTCTCAGGA ACTGCCAAGT
  R
  GCTTTTCGCA GAAGCCCAGA TCTTCATTTC CCAACTGGCT GAATTAGGGT GAAGTTGGGG
  TCACTTGGGA GAGGAAGGCA CTCCATATGC AGATCCCTCC CAGAGCCTGG GGCTGGGTTC
  CTGAGTGGCC GCCTTCAGCC CCAGCCCTTC AGCCCCAGCC CCTCGTCCAG AAGTACGGGC
  CTTTGAGACG CCCTGTGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss61291524	NES16900882	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs47044622					SNP	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291524	NES16900882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79887484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	1600 bp proximal
Gm65896	predicted gene, 65896	1532 bp downstream
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	within coordinates
Rr402035	regulatory region 402035	1653 bp upstream
Rr435055	regulatory region 435055	within coordinates
Rr435056	regulatory region 435056	766 bp proximal
Rr435057	regulatory region 435057	1348 bp proximal
Tssr94472	transcription start site region 94472	1537 bp upstream
Tssr94473	transcription start site region 94473	1909 bp upstream
Tssr94474	transcription start site region 94474	1973 bp upstream
Tssr98381	transcription start site region 98381	1709 bp downstream