rs47045233 SNP Detail

Summary

• ID
  rs47045233
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24532998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTCCTGA GTCCCAGGCT
  CCATAACCAC AGGTCTCTGG GCTCAGTGAA GTCCTAAAGA GTCTCGTTCA CGTTCAAGTG
  GGAATCCCTT GAGCCTGTCT GCATAGGTGG TGCTGTTTAG AGACCATCTT AGGGAAAGGA
  GCTGGTAAGA AAGATGGATC TTAAGGACCC CCCCCCCAGA ATAGACACAG AGACTTCCAA
  K
  AAAAGAGATG GGGTGTGGAT GAGTACCAGG CCCTGGTCGG AGGAGGATCC TAGGTCTACC
  CTGCCTTCAG ACTGAGGGCT TCTTAATTAA AACACAGGGC TAATACACGA GGTTAGTGAC
  CTTTCAAGCC ATCAAAAAAG AGCAGGCTAG GACCCCACAG ACAAGGGGCA ACAGGGGGGT
  GGCTGTTACT CCATAGGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148091648	ENSMUSSNP5677428	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47045233					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24532998 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm15589	predicted gene 15589			within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2			Intron
				Noncoding-Transcript-Variant
Rr608277	regulatory region 608277			1581 bp proximal
Tssr50305	transcription start site region 50305			1271 bp downstream
Tssr50306	transcription start site region 50306			1556 bp downstream