rs47045233 SNP Detail

Summary

• ID
  rs47045233
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24532998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTCCTGA GTCCCAGGCT
  CCATAACCAC AGGTCTCTGG GCTCAGTGAA GTCCTAAAGA GTCTCGTTCA CGTTCAAGTG
  GGAATCCCTT GAGCCTGTCT GCATAGGTGG TGCTGTTTAG AGACCATCTT AGGGAAAGGA
  GCTGGTAAGA AAGATGGATC TTAAGGACCC CCCCCCCAGA ATAGACACAG AGACTTCCAA
  K
  AAAAGAGATG GGGTGTGGAT GAGTACCAGG CCCTGGTCGG AGGAGGATCC TAGGTCTACC
  CTGCCTTCAG ACTGAGGGCT TCTTAATTAA AACACAGGGC TAATACACGA GGTTAGTGAC
  CTTTCAAGCC ATCAAAAAAG AGCAGGCTAG GACCCCACAG ACAAGGGGCA ACAGGGGGGT
  GGCTGTTACT CCATAGGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148091648	ENSMUSSNP5677428	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47045233					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24532998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15592	CpG island 15592	1562 bp proximal
Gm15589	predicted gene 15589	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Rr112277	regulatory region 112277	798 bp distal
Rr124919	regulatory region 124919	802 bp proximal
Tssr50305	transcription start site region 50305	1271 bp downstream
Tssr50306	transcription start site region 50306	1556 bp downstream