rs47045263 SNP Detail

Summary

• ID
  rs47045263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30840420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGCAGGG ATGGGGAAGG
  GTGTCTCAGG GGTATCAGCA GTGTTGACGG ATAGGCGTAA TGACTGCCCA CCCTATTCCC
  TTCCTCCCTG CTAAGTATTG CCTCACATGG AGGCTTCCCT CAGCATCGGG GGCCAGTCTG
  TACCAATCCC TTCCTCCTCC TTCGGGGACT CTGTTCAGTG CTAGGCATGG GAACTCTTGG
  Y
  TTATCCCTGG CAAGACCTTT GGAGAAGCCA CAGATGCAGA AGAGCCTGGT GCCCACAAGA
  AAAGCTGGGA GTTTCCTATG AGTTCCGGGT CCTCCCTAGT TAACCCCATC CCCCTGAGCA
  TCAGTCGTAC CCACCTTTTC AAGCAGCGCG TTCTGCCAGA GACGGAAGAT GAGGAGGAAG
  CAGCGGTCTC GGGCCCCGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60989115	NES16134701	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	C	C	C	C	T		C	T	C	C		C
ss148700666	ENSMUSSNP1854297	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C						C
ss322139654	CHEV_7_31926014	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47045263					SNP	T	?	T	T	T	C	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989115	NES16134701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30840420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	1692 bp proximal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645030	regulatory region 645030	735 bp distal
Rr645031	regulatory region 645031	390 bp distal
Tssr71945	transcription start site region 71945	1632 bp downstream