rs47045423 SNP Detail

Summary

• ID
  rs47045423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58883321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACATTGCC AGAGAGCCAG
  ATGTTGGTCG GGAAAGATCT CAGGAAAGCG GTGAGAGCTG AGGCTCTCGG GTTCTTGGGA
  GCTGCTTTCC TGCTGAACTC GTTCTTGTCC TCAGACCTAA GTCTTATCAC AGATTCCCAA
  CCGCACAATT CTAGCCAAAC TTAAGTGAAT TAAAACTGTC TTCTGCAGGG TCAGCCAGTG
  Y
  ATTTAACCTC TAAGGCATTG GTTCTCAACC TTCGTAATGT CCTTTAGTAT AGCTCCTCAT
  GTTGTGGTGA CCCCCCCCCC CACACACACA CCATAAAATT ATTTCACTGC TACTTCATAA
  CTAACTTTGC TTCTGTTATG AATAGTGATG TAAATGTCTG ATATGCAGCT CACAGGTTGA
  GAATCACAGC TCTAGGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132220967	ENSMUSSNP4720052	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss323695528	CHEV_11_58805997	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47045423					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58883321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	1749 bp proximal
Gm73767	predicted gene, 73767	696 bp upstream
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	1761 bp downstream
Trim11	tripartite motif-containing 11	1037 bp downstream
Tssr108185	transcription start site region 108185	730 bp upstream