rs47045688 SNP Detail

Summary

• ID
  rs47045688
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135281922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCTGTCC TGGAACTCAC TCTGTAGACC AGGCTGGCCT
  CAAACTCACA GAGATGCTCC TGCCTCTGCC TCCCTAGTGC TGGGAGTAAA GGCACCCCCA
  C
  GGCCCAGCCA GCACTGGCTT TAGTTTTTTA TTGTACAATC TTTCTTTTCT CTGCCCTCTC
  TCTTCCCATC CCCTTAAAAC CGTTTCAAAT AGCCCAGGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145531742	ENSMUSSNP6247674	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47045688					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135281922 () rs orientation: forward

Symbol	Name	Function Class
Gm56137	predicted gene, 56137	362 bp upstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr35730	regulatory region 35730	1912 bp distal