rs47046127 SNP Detail

Summary

• ID
  rs47046127
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3623335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACTCCCC ATCCTGGGAG
  TGAGTCTGAT GTTCAGGTAG GATTGTGGTG CTGGTTCAAG GCTGTGAGTT CCCTGTGACA
  CCATCTGAAT TTCCTCTGCC TTCTATCAAA GACCGCCAGG CTGGATGTCA TAGACCACTG
  AGGTGTGACA GAAGGGATTT TTGAGCCACC CTAGCCTGGG TTTTATAGTC CCAGCCACTT
  K
  TATCTTGTTT TAAAATTCTA GCTACTAATT CATTCTGAGT CAAGATCTCT ACCAGCCATC
  ATTTCCTCTT TTCTTCTTCC CTCCCCTCCC TTCCTCACCC CTCTTCCCCT TCCTTCTTCT
  CCACCATCAT TTCTTCCTCT TTTTAATTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT
  CCTTCCTTCC TTCTTTCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146262531	ENSMUSSNP3949380	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47046127					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3623335 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Gm75735	predicted gene, 75735	1500 bp upstream
Rr550923	regulatory region 550923	1244 bp proximal