rs47047339 SNP Detail

Summary

• ID
  rs47047339
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122967745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGTGGGAA GGAAAAGCTT TCTCAGAATG
  TTTTTTGCTC TTGCCATTTA CAGAAACTAA ACCTTGAATC TTGCTGCATT TACTGCTCTA
  TACAAATGAG CATAAATACA TTTTTTTTCT GAAAATGAAG TCATATTGTT TAATAGTGAT
  S
  TCTACCTTCT ATGTTTGACA GTATTTTGTA ACTTCATGAA AACTGTTTCT GTGTTGAGAT
  TTTATCTTGA AGGAACTTTT TCATTTATAC TATAGATCAC AGAAGAACCT CTCACTTGAT
  GGCTAGTTGC TGTGCCACTA AATTGTACCT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60937737	NES16191473	PERLEGEN	MM_PANEL2	f	SNP	C	C		C	C	G		C
ss321934841	CHEV_6_122940804	CHEVERUD	SCREENING_POP	f	SNP			C				G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs47047339					SNP	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60937737	NES16191473	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122967745 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	within coordinates
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	567 bp proximal
Tssr58744	transcription start site region 58744	478 bp downstream
Tssr58745	transcription start site region 58745	421 bp downstream