rs47048540 SNP Detail

Summary

• ID
  rs47048540
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83427394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTATATTGT AGAATTCTTT CTCTGTATTT
  GTCAGTAGCC ATTAAATTGT ATGTCACTTA CCTATGCTCC GCTCTGGCTG AAGAACATAC
  tttaataatt ttaattataa aatGTCTCTT TCACACATAG CAACAAATCT AAAAATAGAT
  K
  ACAGGAGTCT TACATATCAT AATAAGCTTG GCAGAAAAAA ATCTTAGCTG CTCAATGTCA
  TAACAAACTA GAGAATCAGT ACACAATTAT TCCTGCCTCC ATTTCTCCAG AGTTTATTCA
  GAAGGTCATT AAATATCTCT GACATTTTTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60760582	NES16400522	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G		G	T	G	G		G
ss319821406	CHEV_1_83446248	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47048540					SNP	G	G	T	G	G	G	G	G	G	G	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60760582	NES16400522	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83427394 () rs orientation: forward

Symbol	Name	Function Class
Gm69621	predicted gene, 69621	within coordinates
Gm71033	predicted gene, 71033	1929 bp upstream