rs47048995 SNP Detail

Summary

• ID
  rs47048995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30257704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATCTGGAC ACCTTCCATG GACAGCCCTT AGGGTATTCC
  CACTGAGGTC TCCTCGAAAC CCACTCCACT CCCTGGATTC TCCCATGAGG CGTGACTAGC
  Y
  GGCCCACAGG CTCCTGACTC GCTGTGGGCA CTCCTTTCCC AGCCCCAGTC TCAGCTCACT
  TGGCTTGTGG GAGTCTGTCA ATATATCCCC TCCCTACCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990767	NES16136577	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	T		T	T	T		T
ss322135261	CHEV_7_31343298	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs47048995					SNP	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990767	NES16136577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30257704 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Rr400243	regulatory region 400243	1316 bp upstream
Tssr71791	transcription start site region 71791	463 bp downstream
Tssr71792	transcription start site region 71792	494 bp downstream
Tssr71793	transcription start site region 71793	1219 bp downstream
Tssr71794	transcription start site region 71794	1321 bp downstream
Tssr71795	transcription start site region 71795	1549 bp downstream