rs47049001 SNP Detail

Summary

• ID
  rs47049001
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACATA
  AACACACACA TGCTGGTCTG GAGTTAAGGC TTTGAAAAGC TCCTGTGTAG ACTTCCTTGA
  GGACATGGAG AATTTCAGAA TGTCTCCACG TTTCTGTCTT GGAGCAGAAA TGGAGACAGG
  TGTTGGTTTA GGGGAGGACA GTGGTGAGGT TAATGAGCGG AGGTAAGACA TATGATCCCA
  K
  ATTGAGATTA TGAAACAGTA ACTTCTTCCA CTTACAAACC AGGTAACCAG TTATGACACC
  AGACTTGAAC TGTAGATCCA CGAGGCTCAG ACTTTGGGTA TTTCTTTTTT CAGGTTTCCT
  GGTGAAGTCA CTGTAGTTAT CTGAATTGAT TAAGGTTCCC TTGCATGGTG CTGTCATACA
  GAAATGTATG GAATAGAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680454	NES16229703	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47049001					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680454	NES16229703	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354414 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	868 bp downstream
Tssr83714	transcription start site region 83714	1844 bp downstream
Tssr83715	transcription start site region 83715	1800 bp downstream
Tssr83716	transcription start site region 83716	1507 bp downstream
Tssr83717	transcription start site region 83717	1496 bp downstream
Tssr83718	transcription start site region 83718	1462 bp downstream
Tssr83719	transcription start site region 83719	1429 bp downstream
Tssr83720	transcription start site region 83720	1396 bp downstream
Tssr83721	transcription start site region 83721	1165 bp downstream
Tssr83722	transcription start site region 83722	884 bp downstream
Tssr83723	transcription start site region 83723	837 bp downstream
Tssr83724	transcription start site region 83724	518 bp downstream
Tssr83725	transcription start site region 83725	381 bp downstream
Tssr83726	transcription start site region 83726	286 bp downstream
Tssr83727	transcription start site region 83727	296 bp upstream
Tssr83728	transcription start site region 83728	388 bp upstream
Tssr83729	transcription start site region 83729	410 bp upstream
Tssr83730	transcription start site region 83730	890 bp upstream
Tssr83731	transcription start site region 83731	904 bp upstream
Tssr83732	transcription start site region 83732	945 bp upstream
Tssr83733	transcription start site region 83733	982 bp upstream
Tssr83734	transcription start site region 83734	1410 bp upstream
Tssr83735	transcription start site region 83735	1432 bp upstream
Tssr88067	transcription start site region 88067	1401 bp upstream
Tssr88068	transcription start site region 88068	1355 bp upstream
Tssr88069	transcription start site region 88069	909 bp upstream
Tssr88070	transcription start site region 88070	337 bp downstream
Tssr88071	transcription start site region 88071	1001 bp downstream