rs47050080 SNP Detail

Summary

• ID
  rs47050080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101166676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAGGTCC TGGAGCCTCC
  TCTGTGGGCT TTTTTGACCA GATGAGAACG TAAGGGCCTC CTCCAGCTAC CCCTGGTCAT
  TCAGGTGCTT CAGGTTTGTG ACCTTTGCTG AGACCCTGGA TGCTGCAGCA AACAGACATC
  TGCTTTAGCA GAGGGACAGC TTGTCTCTGT GCATCCGCTG GTAGGATCCT CCACTCTGTC
  Y
  AATTAGCTTG CGGCTGCTGC TGGGTTCTGA GTGTTCTCTT ACAAAATGAC AAGGTTAGGG
  GGCTGGAGAG ATGGCTCAGG GGCTAAGAGC ACCCATGTGG CAGTTTGCAA CTGTCTGTAA
  CTCCTGTTCC AGGGGGGATC TGACACCCTC ACACGGACAA ACATGCAGGC AAAACACCTA
  TTGGCATGGA AAATGAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss63630908	NES17041003	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs47050080					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63630908	NES17041003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101166676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7777	CpG island 7777	1547 bp distal
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	835 bp downstream
Rr510000	regulatory region 510000	1939 bp distal
Rr510002	regulatory region 510002	223 bp distal
Rr510003	regulatory region 510003	1587 bp distal
Tssr133214	transcription start site region 133214	1936 bp downstream
Tssr133215	transcription start site region 133215	1683 bp downstream
Tssr133216	transcription start site region 133216	1652 bp downstream
Tssr133217	transcription start site region 133217	1549 bp downstream
Tssr133218	transcription start site region 133218	921 bp downstream
Tssr133219	transcription start site region 133219	899 bp downstream
Tssr133220	transcription start site region 133220	804 bp downstream
Tssr133221	transcription start site region 133221	744 bp downstream
Tssr133222	transcription start site region 133222	592 bp upstream
Tssr133223	transcription start site region 133223	1281 bp upstream
Tssr133224	transcription start site region 133224	1324 bp upstream
Tssr133225	transcription start site region 133225	1335 bp upstream
Tssr133226	transcription start site region 133226	1356 bp upstream
Tssr133227	transcription start site region 133227	1364 bp upstream
Tssr133228	transcription start site region 133228	1382 bp upstream
Tssr133229	transcription start site region 133229	1393 bp upstream
Tssr133230	transcription start site region 133230	1471 bp upstream
Tssr133231	transcription start site region 133231	1503 bp upstream
Tssr133232	transcription start site region 133232	1522 bp upstream
Tssr133233	transcription start site region 133233	1550 bp upstream
Tssr133234	transcription start site region 133234	1568 bp upstream
Tssr133235	transcription start site region 133235	1601 bp upstream
Tssr133236	transcription start site region 133236	1650 bp upstream
Tssr133237	transcription start site region 133237	1672 bp upstream
Tssr133238	transcription start site region 133238	1705 bp upstream
Tssr133239	transcription start site region 133239	1747 bp upstream
Tssr133240	transcription start site region 133240	1839 bp upstream
Tssr133241	transcription start site region 133241	1856 bp upstream
Tssr133242	transcription start site region 133242	1864 bp upstream
Tssr133243	transcription start site region 133243	1890 bp upstream
Tssr133244	transcription start site region 133244	1911 bp upstream
Tssr133245	transcription start site region 133245	1955 bp upstream
Tssr133246	transcription start site region 133246	1980 bp upstream
Tssr136545	transcription start site region 136545	1504 bp downstream
Tssr136546	transcription start site region 136546	1626 bp downstream
Tssr136547	transcription start site region 136547	1702 bp downstream
Tssr136548	transcription start site region 136548	1712 bp downstream
Tssr136549	transcription start site region 136549	1746 bp downstream
Tssr136550	transcription start site region 136550	1852 bp downstream
Tssr136551	transcription start site region 136551	1928 bp downstream