rs47050827 SNP Detail

Summary

• ID
  rs47050827
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69275948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGA TACCTGAGGC TTAGTGGGAG
  K
  GGGAGAGGCA AATAAGCCAA AAACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137856408	ENSMUSSNP473487	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss324083397	CHEV_12_70330161	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47050827					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69275948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4690	CpG island 4690	888 bp distal
Gm47545	predicted gene, 47545	within coordinates
Pole2	polymerase (DNA directed), epsilon 2 (p59 subunit)	979 bp upstream
Rr403319	regulatory region 403319	860 bp downstream
Rr467012	regulatory region 467012	1238 bp distal
Rr467013	regulatory region 467013	531 bp distal
Rr467014	regulatory region 467014	962 bp distal
Rr467015	regulatory region 467015	147 bp proximal
Rr467016	regulatory region 467016	239 bp proximal
Tssr113624	transcription start site region 113624	533 bp downstream
Tssr116494	transcription start site region 116494	990 bp upstream