rs47051041 SNP Detail

Summary

• ID
  rs47051041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29147411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCTGGCA GGAGCCCAGC
  GCACAGAGGA CACAGCCAAT GGCGGTGTGG CAGGTGTCTG CTCCCCTAAC TTGTTACAGC
  AGGAAACATG GGTTCCCCAG AGTTAAACTC CACCACTACC CGCCGGGGTT CACCCCACAC
  CAGCCCTGTG ACAGTGACAG TTTTTTTTTT TTCTCTCTCT CTCTGAAAAA TTCTTCTGCA
  Y
  TCTACCTTCC ATCCCTGGAA TATACTTTCC TATTGTCCTT TCTGTTGTTA AAGACTGATT
  TTTTTTTAAA CCATTATAAT TTTCTGTGTG TGTAAGCACA TGTGTGTTCT TGCAGGCGTC
  TTTGGAGGCT GAGATGGTGC ATACCCTGCA GCTAGAATCA CAGGGCCCTC GCGAGCCGCC
  CAGTGTGGGC TCTGGTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60559615	NES16576395	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47051041					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559615	NES16576395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29147411 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Rr392487	regulatory region 392487	1639 bp upstream
Rr524713	regulatory region 524713	745 bp distal
Rr524714	regulatory region 524714	1824 bp distal
Rr524715	regulatory region 524715	945 bp distal
Rr524716	regulatory region 524716	1691 bp proximal