rs47052489 SNP Detail

Summary

• ID
  rs47052489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78956497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACTGT AATAACAACA
  ACAATAACAA CAGCCCACCA TAAATCAGGG ATGGTTCATG GTCTGTCATC CGACGTCATT
  GCGTTCATTC ACTTAACAGC AGGAGACGTA CATTGAGTGT GTCAGAAGTA CAAAGCACAA
  TGTTCAGTGA GCAGTCTGCA GATGTTCCCC TGGTCAGTCA TCAGCATAAA CACAATGAAT
  R
  TCACTTAGTG ACATAATAAA GGCAAATGAG CCAGGCAGTG GTGGCACACA CCTTTAATCT
  CAGCACCTGG GAGGCAAAAG CAAGAGGAAC TTTGAGTTTG AGGCCAGCCT GGTCTGAAGA
  GTGAGTTCCA GGACAGTCAG AGATACACAG AGAAACTCTG CCTTGAAAAC ACAAAACAAA
  CAATGGATAG CTAAGTAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss61654163	NES17605708	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs47052489					SNP	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654163	NES17605708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78956497 () rs orientation: forward

Symbol	Name	Function Class
Gm46359	predicted gene, 46359	1252 bp upstream
Gm56547	predicted gene, 56547	1203 bp upstream
Rr387474	regulatory region 387474	98 bp upstream
Tssr116800	transcription start site region 116800	1336 bp upstream