rs47054965 SNP Detail

Summary

• ID
  rs47054965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCTAGAT CCATATCTGT GATCCTGCTG GCTGGTAAAA
  TGGACTACTG CCCCAACACT GACAACTCAA ACTGGGTTGT CTCTAGGATT CAAATGTGCC
  Y
  GTGAGCCTCT GCCTTTTCTT GTCTTTCCCC CAGTCCTTGA TCCAGGCCTT CCTAAAAAGG
  GCTGCCTCCT TGGCCACAAA CGTACCCCTG CCCCCACCAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61451634	NES16833318	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47054965					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451634	NES16833318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888539 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	276 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	148 bp upstream
Rr686956	regulatory region 686956	1606 bp distal
Rr686957	regulatory region 686957	within coordinates
Rr686958	regulatory region 686958	191 bp proximal
Rr686959	regulatory region 686959	337 bp proximal
Shisa5	shisa family member 5	1694 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr91571	transcription start site region 91571	1748 bp upstream
Tssr91572	transcription start site region 91572	1200 bp upstream
Tssr91573	transcription start site region 91573	1066 bp upstream
Tssr91574	transcription start site region 91574	833 bp upstream
Tssr91575	transcription start site region 91575	786 bp upstream
Tssr91576	transcription start site region 91576	700 bp upstream
Tssr91577	transcription start site region 91577	212 bp upstream
Tssr91578	transcription start site region 91578	205 bp downstream
Tssr91579	transcription start site region 91579	240 bp downstream