rs47058145 SNP Detail

Summary

• ID
  rs47058145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76555995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCCAGC AGAGAGACTC
  CCCAAAGGGC CATAGAAGCT CTGTGGATGA TGGCCATGTG GTAGGAAAAC CATCCTAGAC
  CTGACCTTCT GTAGGAACCA ACACCGAGTG TCTCCCTCAG TGTTCAAATT TGTGCCACGT
  GAGTCACACC CAAGAGTCCC AGTTTCATTC CCAACTCCAC CGGGAATGTC AAACAGATGC
  Y
  GAGCTGACAC TTAAGTCTGC AGGCAACCTT CTGGACCACA AGGAGCAGGC TTTTGCAACC
  CCAGTTCCCA TACCCCAAAC CCACATGAAG CCTGGACTTT CTCCCTGGAT AAGGGCAACT
  GACAGCCAGT GTTGCATGTA CCAGATGCCC AGGTAGGTAG GCACAGAGCT ATGGCGTCCA
  CTGTGGCCTG TCCCAATAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288921	NES16903909	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47058145					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288921	NES16903909	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76555995 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr94199	transcription start site region 94199	1675 bp upstream
Tssr94200	transcription start site region 94200	1751 bp upstream
Tssr98202	transcription start site region 98202	994 bp upstream
Tssr98203	transcription start site region 98203	1295 bp downstream
Tssr98204	transcription start site region 98204	1805 bp downstream