rs47059318 SNP Detail

Summary

• ID
  rs47059318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185320140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAAGCT CTTTGCCATT
  ATCACGAGCA GGAAGTGAAG CATCAACAGC GATAGTCAGG AATTTTCTCT TGACTTACTT
  CCGGGTCACT GTGGCTTCCT GTCTACTCCT TCCAAACTCC TTCCATATCT GGGAGGCCTC
  AGATTCATTC CAGTGGCCTA GATGCTTAGC TCAGCTGGTT AGAGTGTGGG GTTATGGGGA
  Y
  CAAGCCAGCA GATGGCATTC CCACATGAGC CCATGACCTT GGCACACAGG GCCATCTTCC
  CAAGTTCTCA GATTGCTCCA CTGACTCCGC ACAGCTGGCT CGTGAATATG GGCCAGGCAG
  AGCCTAGGAC ATGGATGGCC CAGCCCCAGC CCTGCAGAGT TCTCCTCCGA GGACAACCCT
  GTGTTACAAG CCACTCGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146437005	ENSMUSSNP2941636	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320177564	CHEV_1_187411822	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47059318					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185320140 () rs orientation: forward

Symbol	Name	Function Class
Rr425415	regulatory region 425415	within coordinates