rs47059413 SNP Detail

Summary

• ID
  rs47059413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCACCTG GAAATTCCCT
  CACGGACACA CCCAGAGTCT GTGCCGCACC GGCCTCCCAG GGATTCTAAA TGCAATCAAG
  CTGGCAGTGA AGACGATCCA CCACACATTT AGGATCAAGT TATTTCTGTG CCGAACGCAG
  GCAGATTTTT AAGATCTTGT CATTATCTTT TTAATCATAC CAGTATGAAA ACCATTTACA
  R
  GAGTTTATGT TAGGTGTTGT AACGGACCCA GAGATGGTTT AAATATACAC AGACATGGCT
  TTTACCTGTA GCCAAGCACT TAGTAGGCTG AGGCAGGAGA ATTGCTATGA GTTTGATCTA
  GCCTGGGCTA TATAGTGAGT TCCAGGCTAA CATGGGCTAC AGAGTGAGAC CTTGTCTCAA
  AAAAAATTAT TATCCTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135876647	ENSMUSSNP4534431	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320958787	CHEV_3_127672165	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47059413					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762896 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1674 bp upstream
Gm65460	predicted gene, 65460	128 bp upstream
Rr52	regulatory region 52	734 bp proximal
Rr584913	regulatory region 584913	1727 bp proximal
Rr584914	regulatory region 584914	1827 bp proximal