rs47059435 SNP Detail

Summary

• ID
  rs47059435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67471876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCGGGAA TGAATCTGTA
  GGGTCTCCCG CAGGCGACAA AAAACCTGCA TCTAGAGGCA AATCCGCGCT GGCTTCCTGC
  TCCCGCGATC GGAAAGAACC ATCATGATCC TAACTCTCAG AGTCCTGCTA CTCTGTTTTG
  GTGCAGGATT TGGGGACCCC CTTTCCCACT CAGGCCAAAC ACTCGGGACT CTGGTCGGGA
  Y
  TCGGTGCTTG TGGCTTGCTG TAGCCTTTCA CCTCCCGGAC TTCGGGCAAA GCAAAGCTTG
  GCTAACGCCG CGGGAGGACG TCCGCCCAGC TTGCCCAGAG CCGGCCAATC CCGGGCGTCC
  ATGCAAATGA GGCTCCTTAT CGGGCCTCGG CTCCGCCTCC CGCGGCCTGG GTTGTAGTAA
  CCATTCATGG GGCCCGCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62435904	NES17250940	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47059435					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62435904	NES17250940	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67471876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6658	CpG island 6658	574 bp distal
Cpgi6659	CpG island 6659	within coordinates
Cpgi6660	CpG island 6660	473 bp proximal
Ebf2	early B cell factor 2	within coordinates
Gm20675	predicted gene 20675	1298 bp upstream
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	1219 bp downstream
Tssr126328	transcription start site region 126328	1081 bp downstream
Tssr126329	transcription start site region 126329	971 bp downstream
Tssr126330	transcription start site region 126330	517 bp downstream
Tssr126331	transcription start site region 126331	161 bp upstream
Tssr126332	transcription start site region 126332	193 bp upstream
Tssr126333	transcription start site region 126333	304 bp upstream
Tssr126334	transcription start site region 126334	368 bp upstream
Tssr126335	transcription start site region 126335	418 bp upstream