rs47060239 SNP Detail

Summary

• ID
  rs47060239
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113063434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT GGCTCATCTA GTGCCTCGCT
  K
  CTTAAAGACT ATGTGAGAGG TTTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52694595	NES15543277	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	G	G	G	T	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47060239					SNP	G	T	G	G	G	G	G	G	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52694595	NES15543277	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113063434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6101	CpG island 6101	49 bp proximal
Dhx29	DExH-box helicase 29	554 bp upstream
Mtrex	Mtr4 exosome RNA helicase	within coordinates
Rr280952	regulatory region 280952	within coordinates
Rr369777	regulatory region 369777	391 bp upstream
Tssr121155	transcription start site region 121155	742 bp upstream
Tssr124081	transcription start site region 124081	456 bp downstream
Tssr124082	transcription start site region 124082	563 bp downstream
Tssr124083	transcription start site region 124083	698 bp downstream