rs47061169 SNP Detail

Summary

• ID
  rs47061169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:146999101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC AAGAGAGAGC TGTGGATGTC
  R
  CCCCTGTGAG GCAGCATCCC TTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144663671	ENSMUSSNP6420200	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321714904	CHEV_5_147873867	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47061169					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146999101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lnx2	ligand of numb-protein X 2			Intron
				Noncoding-Transcript-Variant
Rr399514	regulatory region 399514			1009 bp upstream
Rr624841	regulatory region 624841			1898 bp distal
Rr624842	regulatory region 624842			912 bp proximal
Tssr54497	transcription start site region 54497			1003 bp downstream