rs47061354 SNP Detail

Summary

• ID
  rs47061354
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:36418248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTCCTGTGTG AGATACGTTT CGACCCGGAG CTCCGCCATT
  AAAATACCTC GTGTTGTTAC ATCAAGGTGT TGTGTTCTAT TCGTGATTCT TGGGTGCACG
  C
  CGAATCGGGA GCTGAGTGGG GGTTTCCCCA CTAGGTTCTT TCAGAATCAC ATTCAATATT
  ATCTCAACTA GAAGTATCCC TTAGAGGCCT AGTTTTTTGG C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145549890	ENSMUSSNP5344456	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs47061354					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:36418248 () rs orientation: forward

Symbol	Name	Function Class
Gm54002	predicted gene, 54002	501 bp downstream
Gm66184	predicted gene, 66184	1221 bp downstream
H2-T11-ps	histocompatibility 2, T region locus 11, pseudogene	1878 bp downstream
Rr392573	regulatory region 392573	within coordinates