rs47062825 SNP Detail

Summary

• ID
  rs47062825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126838048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAATACA GCCAGGCATG
  GTGGCACACG CCTTTAATCC CAGCACTCGG GAGGCAGAGG CAGACGGATT TCTGAGTTCG
  AGGCCAGCCT GGTCTACAAA GTGAGCTCCA GGACAGCCAG AGATATAAAG AGAAACCCTG
  TCTCGAAAAA CCAAAAAAAA AAAAAAAAAA AAAATCTAAT ACACTCTTAC AAGAAATTTC
  Y
  ACAGACACAC ATACTACCAA TGTACCAATA CTAGAGAGTC AGCATAAGTT ACCAAGAGGA
  TTTGTAGCTG TGTGGATCTT GATCTGATCT AATCTAGGTA TTTCCAAATG TTACGGAAGT
  ATGCGTGAGA GCATAAGAAA CTCTATCTGG GGCTAGTGGA TGGCTCACTG GGCAAGAGCA
  CTGACTGCTC TTCTGAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147516172	ENSMUSSNP2784793	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320498724	CHEV_2_126821864	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47062825					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126838048 () rs orientation: forward

Symbol	Name	Function Class
Rr564430	regulatory region 564430	1362 bp distal
Rr564431	regulatory region 564431	541 bp proximal