rs47064631 SNP Detail

Summary

• ID
  rs47064631
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66904021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA CGATGACGAA GGAAGGGCAT
  A
  CTTTTAGTTA TTGAAATGTC AATGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144520426	ENSMUSSNP1558314	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319758759	CHEV_1_66911436	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47064631					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66904021 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	1585 bp upstream
Cpgi339	CpG island 339	1123 bp distal
Gm25832	predicted gene, 25832	1935 bp upstream
Rr412478	regulatory region 412478	1596 bp distal
Rr412479	regulatory region 412479	1095 bp distal
Rr412480	regulatory region 412480	870 bp proximal
Rr412481	regulatory region 412481	1978 bp proximal
Tssr12011	transcription start site region 12011	1603 bp upstream
Tssr12012	transcription start site region 12012	1577 bp upstream
Tssr12013	transcription start site region 12013	1565 bp upstream
Tssr12014	transcription start site region 12014	1547 bp upstream
Tssr12015	transcription start site region 12015	1527 bp upstream
Tssr12016	transcription start site region 12016	1512 bp upstream