rs47067247 SNP Detail

Summary

• ID
  rs47067247
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71522517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGT TCCACATGTT CAGTTTTATA
  C
  GAGAGAGCAA AATGTAACAG GTGAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133276473	ENSMUSSNP2889971	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47067247					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71522517 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700040L08Rik	RIKEN cDNA 1700040L08 gene			1419 bp upstream
Chmp3	charged multivesicular body protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi17526	CpG island 17526			914 bp distal
Rr399696	regulatory region 399696			1565 bp downstream
Rr631970	regulatory region 631970			1606 bp distal
Rr631971	regulatory region 631971			929 bp distal
Tssr57031	transcription start site region 57031			1665 bp downstream
Tssr57032	transcription start site region 57032			1635 bp downstream
Tssr57033	transcription start site region 57033			1576 bp downstream
Tssr57034	transcription start site region 57034			1547 bp downstream
Tssr57035	transcription start site region 57035			1166 bp downstream
Tssr57036	transcription start site region 57036			293 bp downstream