rs47067556 SNP Detail

Summary

• ID
  rs47067556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98886858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACG CCTCCCGCTC GCTGCTCCCG
  R
  ACCCCGCCCT CCCCGGGCCG GGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss137987695	ENSMUSSNP1534109	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324133995	CHEV_12_100158809	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47067556					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98886858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	within coordinates
Rr403444	regulatory region 403444	81 bp downstream
Rr470976	regulatory region 470976	within coordinates
Rr470977	regulatory region 470977	168 bp distal
Rr470978	regulatory region 470978	1177 bp proximal
Tssr114655	transcription start site region 114655	46 bp downstream
Tssr114656	transcription start site region 114656	within coordinates
Tssr114657	transcription start site region 114657	21 bp upstream
Tssr114658	transcription start site region 114658	45 bp upstream
Ttc8	tetratricopeptide repeat domain 8	within coordinates