rs47068638 SNP Detail

Summary

• ID
  rs47068638
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134486956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC CCTGTCTCGA AAAAACAAAA
  M
  AAAAAAAAAA AAAAAGAAAT TATGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145508386	ENSMUSSNP4007331	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319983174	CHEV_1_136455795	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47068638					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134486956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi773	CpG island 773	668 bp proximal
Kdm5b	lysine demethylase 5B	960 bp upstream
Rr367005	regulatory region 367005	1958 bp downstream
Rr367006	regulatory region 367006	823 bp upstream
Rr418948	regulatory region 418948	1765 bp distal
Rr418949	regulatory region 418949	470 bp proximal
Tssr8904	transcription start site region 8904	939 bp upstream
Tssr8905	transcription start site region 8905	972 bp upstream
Tssr8906	transcription start site region 8906	996 bp upstream