rs47068897 SNP Detail

Summary

• ID
  rs47068897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34586162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAGAAATA GTTCTCACAG ATGAGCAGGG CTTTTATTTA
  AATTGGGTTT TTTTTTAATT TTTCATATGC CACAAAATCT CAAAGGTTAA AGTTTTTTTT
  Y
  TAGTATCTAA GGCTGCAGGA CAAGCAAAAA CACATTTCCC CTCAAATACA AACTCTGCTT
  AATTTGTAGC TATGAAAGCA GAACAATGGT TACCTAGAGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss63254817	NES17488584	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs47068897					SNP	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63254817	NES17488584	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34586162 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	Intron
Rr405932	regulatory region 405932	949 bp downstream
Rr546756	regulatory region 546756	782 bp distal
Rr546757	regulatory region 546757	516 bp distal
Rr546758	regulatory region 546758	1811 bp proximal
Tssr156136	transcription start site region 156136	1226 bp downstream
Tssr156137	transcription start site region 156137	826 bp downstream