rs47069589 SNP Detail

Summary

• ID
  rs47069589
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105359065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGATTCC TAGCAGGGTC
  TTAGTGCCTC ACCCACCAGA GCCGCAACAA GATGCAGTCC TGGAGCCTGG AAGTCACTTC
  CTGGGGTCTC TAACCTGAGA CCTGCTAGGC AGATGCGTAG CAGCAAACAC ACTAGCTGTC
  TGAGAAACAC CTTCTGGTGT GCTCTCAAGG TCGGGTTGGG ACTCTGACTG TGTTCTTATT
  A
  TTAGGGAGCT TGGTTATCAA ACAGCACCTT TGGAGCCATC TGGATCCTTC TGGAGAAGTC
  TATTGCACAG GTAACCCAAC AAACAGACTA GGAGGAAGTG TTAGAAGAAA AAACAAATCC
  AGTATGAGAT TCCCCCAAAG GCAAGGTTCA TATAAATTTG GACATAAGTA TAAGAGAATG
  AATCCACTCT GAACATCCCC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147504728	ENSMUSSNP2476461	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47069589					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105359065 () rs orientation: forward

Symbol	Name	Function Class
4930588G05Rik	RIKEN cDNA 4930588G05 gene	836 bp downstream
Rr438484	regulatory region 438484	416 bp distal
Rr438485	regulatory region 438485	within coordinates
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr99169	transcription start site region 99169	1409 bp upstream
Tssr99170	transcription start site region 99170	1187 bp upstream