rs47070169 SNP Detail

Summary

• ID
  rs47070169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:59928744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCTGCC TTTTGGCTAA
  GATCAAGTGT AGTGTTTTAT TCTGTCTAGC TTTTTAACTT ACATGTCCTT TGTTTATGTA
  TTATTGGGTC CAGTTTCAAA TTTGTATCAG ATTCCTCAGA GTTCAAACAA GTGAGTCTAT
  ATAATTTTCT TCCATAGTCT TTCTTTGGCA CTTTACCTTT GGTTTGGTTT GTCCTATTCA
  R
  GTAGGACAAG GTGAAACTCC ATACTTTAAA TGTACCACAT TTACTTCTTC TGTTTTTCTG
  TTGAGGCACA TCTAGGTTAC TTCCAGTTCC AGCATTGAAT TGTGTTGACT ATTTTGTTGC
  CAAGACTATG CTATGTTTAT TACTTTAGCT CTGTAGCTGA AATTTGGAAT AGTGCTACAA
  GAGTGATTTT GTAGTTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148519397	ENSMUSSNP2570523	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47070169					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:59928744 () rs orientation: forward

Symbol	Name	Function Class
Gm52849	predicted gene, 52849	56 bp downstream
Tssr46351	transcription start site region 46351	205 bp downstream