rs47070267 SNP Detail

Summary

• ID
  rs47070267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134946088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCC CCAGTAACGG CGCCGATTTC
  R
  CTCCTACTCC CCGGGAGAAC GGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147541543	ENSMUSSNP3986818	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321351227	CHEV_4_134774692	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47070267					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134946088 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	888 bp distal
Rr86244	regulatory region 86244	713 bp proximal
Rr102925	regulatory region 102925	1314 bp proximal
Tssr43958	transcription start site region 43958	1964 bp upstream
Tssr43959	transcription start site region 43959	1943 bp upstream
Tssr43960	transcription start site region 43960	1791 bp upstream
Tssr43961	transcription start site region 43961	1732 bp upstream
Tssr43962	transcription start site region 43962	1686 bp upstream
Tssr43963	transcription start site region 43963	1627 bp upstream
Tssr43964	transcription start site region 43964	1515 bp upstream
Tssr43965	transcription start site region 43965	123 bp upstream