rs47071958 SNP Detail

Summary

• ID
  rs47071958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:27130697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTTCTG CATTTGATCA
  GTGTGCTTCA GATTTGTAAT AATTTTACAT ATGCACATTT TCTAGGATGC TTATTGCTCA
  AGATATCAGT CTTTAATATG TTTTATTTCT GTGTTATATG CTTAAACATT CTGAACCAAG
  AAGAGTTAAA ATATAGATCA GAAATTTAAA TGTAGAAAAA ATAAATCCAG AGACTGATAG
  Y
  TATATAAATT ATTGTGAGGG CAAGATTCTT AGATGTTGTC ATAGACAAAA AATCTTAGCT
  ATTTAAGTAG TATCTTTTAA TCTTCAACTT TCTGACATGA TTAAGGTAAA TCAAATTTGG
  ATATCAGTAA AGAGATACAT TGGACAAAAT GCAGAAATGC ATAAAGTAGG GTACAGGCTA
  TGCACTTGTT TAATTGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146122144	ENSMUSSNP2364533	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47071958					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:27130697 () rs orientation: forward

Symbol	Name	Function Class
Rr376259	regulatory region 376259	1773 bp upstream