rs47074693 SNP Detail

Summary

• ID
  rs47074693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCGGATT TGCATCACAT
  CTTGTTTAGT TTTCCTCTTT GTCTGTCTCT GCTTACTTTG CACTAAAAAT ATTGTTTTCT
  TTGTAGTTCC ATTTTTCTTC CAGGTAACTG AAACAACCGA AGCATTGCCT TCCCAGGAAC
  ACTTTTGCCT AAGGCCTGAG TGTCAGCTGT CTTTCTACTG TACTCCTGAA TGTTCTATTC
  Y
  AGTACTTACC CAGTACTTGC CTATCCAGTA CTTACCCAGT ACTTGCCTAT CCAGTACTTA
  CCCAGTCCTT ACTTATCCAG TACTTACCCA GTACTTACTT ATCCAGTACT TACCCAGTAC
  TTGCCTATCC AGTACTTACC CAGTACTTAC TTATCCAGTA CTTACCCAGA CCACAAAACT
  GACTTTGTGT CCCTTTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321046998	CHEV_4_14856461	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47074693					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	523 bp proximal
Gm11837	predicted gene 11837	594 bp upstream
Gm68732	predicted gene, 68732	413 bp downstream
Rr589248	regulatory region 589248	47 bp proximal
Rr589249	regulatory region 589249	548 bp proximal
Rr589250	regulatory region 589250	1136 bp proximal
Rr589251	regulatory region 589251	1373 bp proximal
Tssr36545	transcription start site region 36545	546 bp upstream
Tssr36546	transcription start site region 36546	1305 bp upstream
Tssr36547	transcription start site region 36547	1395 bp upstream