rs47076065 SNP Detail

Summary

• ID
  rs47076065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87687070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG CTGCAGGCTC GCCAGGTCTC
  Y
  AATGCCATCG TGCGCTTCCC CAACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132512907	ENSMUSSNP1870645	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss323773662	CHEV_11_87609746	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47076065					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87687070 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	within coordinates
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	1697 bp downstream
Rr453904	regulatory region 453904	72 bp distal
Rr453905	regulatory region 453905	18 bp distal
Tssr3631	transcription start site region 3631	1476 bp downstream
Tssr3632	transcription start site region 3632	976 bp downstream
Tssr3633	transcription start site region 3633	69 bp upstream
Tssr103988	transcription start site region 103988	1708 bp downstream
Tssr103989	transcription start site region 103989	1429 bp downstream
Tssr103990	transcription start site region 103990	1017 bp downstream
Tssr103991	transcription start site region 103991	944 bp downstream
Tssr103992	transcription start site region 103992	926 bp downstream
Tssr103993	transcription start site region 103993	452 bp downstream
Tssr103994	transcription start site region 103994	370 bp downstream
Tssr103995	transcription start site region 103995	201 bp downstream
Tssr103996	transcription start site region 103996	151 bp downstream
Tssr103997	transcription start site region 103997	9 bp upstream
Tssr103998	transcription start site region 103998	116 bp upstream
Tssr103999	transcription start site region 103999	1072 bp upstream
Tssr104000	transcription start site region 104000	1184 bp upstream
Tssr104001	transcription start site region 104001	1214 bp upstream
Tssr104002	transcription start site region 104002	1240 bp upstream
Tssr104003	transcription start site region 104003	1313 bp upstream
Tssr104004	transcription start site region 104004	1339 bp upstream
Tssr104005	transcription start site region 104005	1363 bp upstream
Tssr109976	transcription start site region 109976	177 bp downstream
Tssr109977	transcription start site region 109977	1101 bp downstream
Tssr109978	transcription start site region 109978	1129 bp downstream
Tssr109979	transcription start site region 109979	1181 bp downstream
Tssr109980	transcription start site region 109980	1369 bp downstream