rs47076250 SNP Detail

Summary

• ID
  rs47076250
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992460 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C ATAGTAAGAT CATGGCCAGT ACCTTTACCG GTACATTCCA
  ATTCTTCTAC CTAGCCTTTG TTTTTTGCAA AGGAATGTTT TTTGGATGTG CCTTATGCAC
  R
  ACAAACTCCT CAAGAGCCAC GGGTGTATAA GAGTACTAGT TTTCATTTAA ATTATACATT
  ATGCTTTGTG CATAATGTGG ATAAACCTTT TACACCCTGT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133991432	ENSMUSSNP2331699	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss146791850	ENSMUSSNP6716770	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss148920976	ENSMUSSNP1363953	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47076250					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992460 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2			Intron
				Noncoding-Transcript-Variant
Gm69636	predicted gene, 69636			within coordinates