rs47076591 SNP Detail

Summary

• ID
  rs47076591
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85329127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC CATTGGTGGC AGCCACTTCA
  M
  AAGCTGATGT GATTAGCCAG TTGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60644337	NES16270708	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C		A	C	C		C
ss145390251	ENSMUSSNP6983951	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss322750942	CHEV_8_87126397	CHEVERUD	SCREENING_POP	f	SNP												C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47076591					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644337	NES16270708	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85329127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit			Intron
				Noncoding-Transcript-Variant
Cpgi20697	CpG island 20697			1595 bp distal
Cpgi20698	CpG island 20698			351 bp distal
Gm64375	predicted gene, 64375			493 bp upstream
Rr666538	regulatory region 666538			1994 bp distal
Rr666539	regulatory region 666539			376 bp distal
Tssr78406	transcription start site region 78406			1121 bp downstream
Tssr78407	transcription start site region 78407			1058 bp downstream
Tssr78408	transcription start site region 78408			1021 bp downstream