rs47077868 SNP Detail

Summary

• ID
  rs47077868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153360442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTAGC CCTGGCTGTC
  CTGGAACTAA GAAATCTGCC CACTTCTGTC CCCCAAGTGC TAGGATTCAA TGTGTGTGCC
  CCCAGGTCAG GGATACACAC AGGTCTTAAT GGGCAGCCTG GATTCCAGGA TGATGTCTGG
  TTCTTCCTCC TACCTCCTGA GAGACACCTT CCAACCAGCT CACCTCCTAC AACTCCGTAC
  Y
  TAGGAACCAG GTCCCAATCA ACCCTGGAGG CTGATGTCCT CTTCCTAGTA GCCCCTCCCT
  GCCATGCCCA AGTCCCTGCA CCCCCTCCAC CCCTCACTCT CTCCCACCTT GGCCCGCTGC
  TTTGTCTTTG ACCCTCAATC CCAGAGTCCC TTGCAGCTGC TGCTTACCAC AGGACAGGCA
  CAGCAGAGAA CAGCTCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147995231	ENSMUSSNP5656194	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47077868					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153360442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567666	regulatory region 567666			1025 bp distal
Rr567667	regulatory region 567667			1361 bp distal
Rr567668	regulatory region 567668			1330 bp proximal