rs47078007 SNP Detail

Summary

• ID
  rs47078007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23116961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTGGAAGG GTTCTTCTGA GACCCCCCCA GAGAACCCGG
  TGGAGGTATC CAAAACATTA AGGGTTAACC ACGAGTGGGA AAGTTGGGGT TAGATATTGT
  R
  AAGTTAGTGT CTCATAGAGA AAAAGTGCCT TTCATACTCA GGATAAATGG AGGGATTTTT
  TTTGGGGGGG GGTTCGAGAC AGGGTTTCTC TGTGTAGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146216121	ENSMUSSNP1525403	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47078007					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23116961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	1057 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	546 bp upstream
Klf9	Kruppel-like transcription factor 9	1629 bp upstream
Rr405898	regulatory region 405898	1003 bp upstream
Rr545290	regulatory region 545290	78 bp proximal
Rr545291	regulatory region 545291	557 bp proximal
Rr545292	regulatory region 545292	1507 bp proximal
Tssr155578	transcription start site region 155578	510 bp upstream
Tssr155579	transcription start site region 155579	1225 bp upstream
Tssr155580	transcription start site region 155580	1343 bp upstream
Tssr155581	transcription start site region 155581	1359 bp upstream
Tssr155582	transcription start site region 155582	1382 bp upstream
Tssr155583	transcription start site region 155583	1422 bp upstream
Tssr155584	transcription start site region 155584	1467 bp upstream
Tssr155585	transcription start site region 155585	1529 bp upstream
Tssr155586	transcription start site region 155586	1586 bp upstream
Tssr158621	transcription start site region 158621	1040 bp downstream
Tssr158622	transcription start site region 158622	1370 bp downstream