rs47078537 SNP Detail

Summary

• ID
  rs47078537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100141222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTATTGGG TGCATTGCGA GTGAGCAATG GGCAGAGTAG
  AGTACTGTCA GCTTTGTAAG ATCACCACCA GCTATGTTGG GATCACTATC CACCCACCAG
  Y
  TATGGGGTTT TGCCACTTGA TAGTGAAGGT TTATTTTATC TAGTCTTGTT TAAAGTAAGC
  CAGCTGGCTA ATAAAGCCAC ACTGGGTGTT CAGGATCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145533086	ENSMUSSNP2151058	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47078537					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100141222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	703 bp proximal
Gm72028	predicted gene, 72028	within coordinates
Rr400469	regulatory region 400469	1134 bp upstream
Rr652131	regulatory region 652131	277 bp proximal
Rr652132	regulatory region 652132	404 bp proximal
Rr652133	regulatory region 652133	1005 bp proximal
Tssr68123	transcription start site region 68123	1304 bp upstream
Tssr68124	transcription start site region 68124	1334 bp upstream
Tssr68125	transcription start site region 68125	1755 bp upstream
Tssr68126	transcription start site region 68126	1814 bp upstream
Tssr68127	transcription start site region 68127	1924 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	1343 bp upstream