rs47079245 SNP Detail

Summary

• ID
  rs47079245
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40506419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTTTCC ACTCCACTGG
  CAGCTGGTTA TTCTTAGCCA CAGATTGCTT TTCACCCTAG TGTTAACTTA TTAGAGCTGT
  GGCGCAAGGC TGCTAGATAG GCAACTAGTA AGATCATGGC CGTCTGTCTT CTATTACCTC
  CTCTGGAAAC AAGTCCAGGA CCTCCCTCTC CCAGCCTTCC CCACTGGACT GTGTCCTGCT
  S
  GGAATCTTCT CTTGTCTTTC TTCAACCCTG GCAGTCTGAC ATCTCAGCTC ACCTGCTCAG
  AAACGCACAC GGCTCAGTTG GAGGAGAAGC GCACATTAAA CCTCCCTGAA AAGGCTTCAA
  GGCTCACGGA GTGGGAGTCA AGTGGAGCTA GGGAGGAGGC AGAGAACCAC TCATAGCCAG
  ACCTCATGAT GTCTGCCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147067390	ENSMUSSNP1553344	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47079245					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40506419 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr214674	regulatory region 214674	819 bp distal
Rr224698	regulatory region 224698	within coordinates
Tssr93026	transcription start site region 93026	370 bp downstream
Tssr93027	transcription start site region 93027	360 bp downstream