rs47079420 SNP Detail

Summary

• ID
  rs47079420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTAACA TATTGCTATG
  GAAACCAGGA AATAGAAACA GCACGCTAAT CATTCATTTA GACAACTACG GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT AAAATCCATC TATTCACCTT
  CTATTGAAAG ATGTTATAAA CTTTCAAGCT AATCAAGATG GCTTTTTAAA GGCCAGGGGC
  Y
  TTGTAACCAG TAACACCAGA GTTTCAGAAT GAGCCACAAC CTTCATGAAT AGCGTGATAT
  TTGGAAGGAC CCGCTTGAAT CAAGTTTGCT TGGCTGGAAC CCCTGGACAT AGTATAGACC
  CTTGAAGGAG ATTTGAGAAC TGGGTTCTAA CCCTGGCTTT CTTAATACCA GCTGTGTGAG
  CTTCCTAGGA ATTCGTACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014948	ENSMUSSNP1421554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47079420					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	838 bp proximal
Met	met proto-oncogene	1323 bp upstream
Rr626799	regulatory region 626799	833 bp proximal
Rr626800	regulatory region 626800	997 bp proximal
Rr626801	regulatory region 626801	1040 bp proximal
Rr626802	regulatory region 626802	1572 bp proximal
Tssr55050	transcription start site region 55050	955 bp upstream
Tssr55051	transcription start site region 55051	1078 bp upstream
Tssr55052	transcription start site region 55052	1272 bp upstream
Tssr55053	transcription start site region 55053	1349 bp upstream
Tssr55054	transcription start site region 55054	1408 bp upstream
Tssr55055	transcription start site region 55055	1424 bp upstream
Tssr55056	transcription start site region 55056	1450 bp upstream
Tssr55057	transcription start site region 55057	1615 bp upstream
Tssr55058	transcription start site region 55058	1655 bp upstream
Tssr55059	transcription start site region 55059	1694 bp upstream