rs47079623 SNP Detail

Summary

• ID
  rs47079623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124020178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAATAA TAAGTTTAAA
  TCACATCTTC ATGAACAAAT ACTTTCTTCT CAAACAAAAA GTCAGCATCT ATCATGATGA
  ATTTTGAATC ATACTTGTGT TGGAGATAAG AATATTAGCT CTGATACAAA TATTGATTAC
  TCGAGGTCAA CTTTAAGAAA TTACTAACAA TTCTTGCTAA CATACAAGAA CGTGGACTTG
  Y
  AGGATTTAGA GGCACACCTA GCCTATCATC ATTTATTTTT GTGCTTGAAA CAAACATAAA
  ATCATGAGCA CTCTAGACTA TTAGCCAAGA CAAACATATT TTGTCAATTA TAATGCCCTT
  TAAAAATTTA AAACTGTGTT TATTTTATGT TTTTCTTATG TGTTTTATGC TTGTAGTTTT
  TGCTGATACA CATTCTACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445850	NES15938639	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	T	C	C	C		T	C	C	C		C
ss320926419	CHEV_3_123929447	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47079623					SNP	C	T	C	C	T	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445850	NES15938639	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124020178 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	329 bp distal