rs47079787 SNP Detail

Summary

• ID
  rs47079787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61180898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAACAAG TAGGCTGTCA
  GAAAGAGCCC ATGCCACCAC CCCCCCCAGA ACCCTCAAGT GTTACAGTTC TTCAGCTAGA
  TCAGTAACCT AGATGGCCTA TGGAAAAGCT GGACCCCACC CCCACCCCTG GGACTCTGCT
  AGGTGGGGGG TGGGGGGGTG ACACAGTCTC AGTCACACCC CTCTGCATTA CCATGGCAAC
  R
  TGACAGCTTT GCCAACAACA TGTGAGCCAA CCACAAGACA ATGCCAGAGA AACAAAGATC
  GAGCATGAGC CCTGGGCCCT GTTCTGATGG CCTCCAACCG CTGGTCTAGA CTAGAGGATA
  ACCCTGGGCC TTGATGATCC CGCTGCAGAT GCAAGAGAGG TTGAAGTGTC TCCAGACAAA
  AGCAATTACA GTATGGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52341776	NES15287654	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		A
ss323328392	CHEV_10_60807867	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47079787					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52341776	NES15287654	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61180898 () rs orientation: forward

Symbol	Name	Function Class
Pald1	phosphatase domain containing, paladin 1	within coordinates
Rr215533	regulatory region 215533	498 bp distal
Rr215534	regulatory region 215534	1903 bp proximal
Rr228161	regulatory region 228161	698 bp distal
Rr228162	regulatory region 228162	within coordinates