rs47080816 SNP Detail

Summary

• ID
  rs47080816
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85385450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTGCTT AAGCCTATAT
  TAAAATCTCT TCAATAAAAT CTTCCCACTC TCCTTCATAA AACTGGCTAG TCCTGAAATT
  CTTTTCTGTG TCAAAATGAC TAATCCTGTT TCAGCCCGAG CTGAGGTTCC TAAAACTCCA
  GAACTCCGCG GGCTGCTGAG GGTTATGGTG GGGATCTGGG CCTCAATTAC CCATACGGAG
  K
  ACAAGAAGGG GCCCACAGCA CCAGGCTTGC TCTGTCTGGA AATGCCACAC TACCAGTGTG
  GGCCAGAGGG GCTGTGCTCA GGTTTCCTGG TCTGGGCTGG GGGTGAGACA GACATGACTC
  TCGGCCTGGC TCCGACAGTG AAAGGTAGGA AGCAAACACA GGCCAAACGC TGGGCAGGGT
  CTAGCCTTGC AAGTCCATCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906791	NES15956989	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47080816					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906791	NES15956989	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85385450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17643	CpG island 17643	636 bp proximal
Rr633210	regulatory region 633210	351 bp proximal
Rr633211	regulatory region 633211	1937 bp proximal