rs47083262 SNP Detail

Summary

• ID
  rs47083262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97273342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTATTTTGC ATAGCTTCTG TTGATTTCTC TGTAAGTAGA
  CTAAGTTTTC TCTGTAAGTA GACTAAGTTT TCACCTCACC GGCCTGTGAG GACCCACTGT
  R
  AATGTCCGAT GTGAGGAGGC ATAGGGTGAT GGATGGGCAA GCCAGGGCAC ATCAGAGGAG
  ACCTGGACCA GAGGACTCCT GAGACCAGCT GGCATGTGGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63608396	NES17040119	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47083262					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608396	NES17040119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97273342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7620	CpG island 7620	1379 bp proximal
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391162	regulatory region 391162	within coordinates
Tssr132861	transcription start site region 132861	1513 bp downstream
Tssr132862	transcription start site region 132862	1473 bp downstream
Tssr132863	transcription start site region 132863	1425 bp downstream
Tssr132864	transcription start site region 132864	1402 bp downstream
Tssr132865	transcription start site region 132865	1255 bp downstream
Tssr132866	transcription start site region 132866	1227 bp upstream
Tssr132867	transcription start site region 132867	1697 bp upstream
Tssr132868	transcription start site region 132868	1719 bp upstream
Tssr136113	transcription start site region 136113	1566 bp upstream