rs47083441 SNP Detail

Summary

• ID
  rs47083441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171807111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGCAAGCA AAGAAAACAG AATGTTTGAG AAAGCTACAA
  GCTGTAAAGT AGCAGAGAGA GCAGAGAGGC CAAGGAACGG AGACTCACCT TCAAGACATA
  R
  GGGGAGGGAG AGGGGGTTGA GCAGCTGGAG TACAGCCAAG AACATGTCTG GGTAGAAAAC
  AAAGGACAAC AGAATAAGAA GTTAGATGAC ATTGATGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120005019	PARCsnp_1.16587	PARC_SEQ	INBRED	f	SNP		G	A
ss120007674	PARCsnp_1.06104	PARC_SEQ	INBRED	f	SNP		G	A
ss146179203	ENSMUSSNP868677	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320121960	CHEV_1_173909675	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs47083441					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171807111 () rs orientation: forward

Symbol	Name	Function Class
Rr423419	regulatory region 423419	311 bp proximal