rs47085048 SNP Detail

Summary

• ID
  rs47085048
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52651237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTATACC TAACCAAACC
  AATAATCTCA AGGAGACAAG ACTCTCAAGA TGCTTTCTGG GGTATTGAAT TGGTTATGAA
  AATTAATGTG AGGTGATCAG TCTTAAATGT GTGTAGAAGC CAGGCTGTGT ATGTGAGTAA
  ATGGCTCACC AGCATGTAGG GATTTACAGT TCTCTTCTTT GGACTCTAGA TACACTGGGA
  M
  ACGTTGCTTC AAGCATCTAA TACTTTTACT TGCAAAGATG GAGACTGTGT GTTGAAGGAT
  AAGTGAAAAT ACATCTATAT CCCTTAAAAT GATTTTGTCA GTTTTTTTTT TTATCATAGC
  AACAGAAAAA TAACTAAAAC AATCACCTAT ATATTTTGTC TGTTCCTGCA ATTTAGCATT
  AAATACTTAT TGAAAGTATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144869199	ENSMUSSNP5734329	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47085048					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52651237 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	1146 bp upstream
Gm64848	predicted gene, 64848	within coordinates
Rr663484	regulatory region 663484	985 bp distal
Tssr81291	transcription start site region 81291	1304 bp upstream
Tssr81292	transcription start site region 81292	1131 bp upstream
Tssr81293	transcription start site region 81293	1058 bp upstream
Tssr81294	transcription start site region 81294	1011 bp upstream