rs47085668 SNP Detail

Summary

• ID
  rs47085668
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172155253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA GGAGACACGC TGAAAAGGGT
  K
  GGCAATAGGA GATTGGGGGC CATGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009199	PARCsnp_1.18678	PARC_SEQ	INBRED	f	SNP			T	G
ss120012403	PARCsnp_1.08469	PARC_SEQ	INBRED	f	SNP			T	G
ss146188040	ENSMUSSNP183096	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320124236	CHEV_1_174257817	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs47085668					SNP	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172155253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	731 bp distal
Gm70847	predicted gene, 70847	760 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423527	regulatory region 423527	1396 bp distal
Rr423528	regulatory region 423528	1768 bp distal
Rr423529	regulatory region 423529	1353 bp distal
Rr423530	regulatory region 423530	826 bp distal
Rr423531	regulatory region 423531	532 bp proximal
Rr423532	regulatory region 423532	1586 bp proximal
Tssr15210	transcription start site region 15210	1461 bp upstream
Tssr15211	transcription start site region 15211	1448 bp upstream
Tssr15212	transcription start site region 15212	1431 bp upstream
Tssr15213	transcription start site region 15213	1575 bp downstream
Tssr15214	transcription start site region 15214	1631 bp downstream